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… stage, anywhere in the world, for free. We accept new projects related to energy and the environment several times a year. A few proposal calls have … from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda Harmon-Smith, who helps shepherd CSP …

… the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …

Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating … exchange and assists with large scale computations on R&D projects. …

… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation … China (No. 92251302, 91951205, and 31970122). Part of this project was supported by a Natural Sciences and Engineering …

… ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic … Program; Genome Canada Large-Scale Applied Research Project Competition; NASA Exobiology; Graduate Women in …

Congratulations to the 2020 Highly Cited Researchers at the … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …

… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of Energy (DOE) …

My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …

… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought invaluable … partnership had become a “model” of sorts at the Lab. “This project represents part of our long term efforts to …

Team develops a computational pipeline to sift and characterize RNA virus sequences.  … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …

… research as part of the Metagenome Program. His responsibilities include the development of novel computational … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., … … DOE BER Early Career Research Program, 2021 Thomson Reuters Highly Cited Researcher (Cross-field), 2020 LBNL …

Program was brimming with excitement and determination as they came onsite. From data carpentry to science … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on …