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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as well as RE 1697/16-1 (CharMod) …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … was close to 1. Even the most abundant virus was only 11 times more abundant than its host. There just don’t seem to …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … clearly have unexpected chemical potential. … This research project was supported by a grant from Santa Barbara Cottage …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate intern): Currently …
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Graduate Students Get Thesis Research Opportunity at the JGI
… between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … and this is a remarkable opportunity to launch a pilot project and begin the work of understanding how engineered …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been … is famous for its work sequencing human and environmental genomes. But we now have these DNA synthesis capabilities …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral … development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria …
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