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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint … all those art history photos of the, you know, various old buildings in in Rome didn’t quite do it for me. And at the … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint …
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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back again … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow …
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components … component for the plant, like the brick-and-mortar of a building or the human skeleton. It’s more complex, and … anaerobic fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to the …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint … by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … really interesting – when you can begin to see these guys building better weapons against one another. That gives us …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research … is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s … into their new shared home, the Integrative Genomics Building at Berkeley Lab. … The U.S. Department of Energy …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis …
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