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Crops as Tough as World Cup Turf
… from grasses into other crops.  One grass they studied just happened to be the same species that covered World Cup pitches in 2022.                     …
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Better Living Through Bioenergy
Pseudomonas putida to break down biomass and help bring about a more sustainable, biobased economy. They conduct research at the … Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and … by DOE. Email engage@kbase.us if you have questions about how KBase can support your CSP data. The proposal call …
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Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full … terms. The JGI solicited UEC nominations in late 2022 and the election period concluded on Jan. 6, 2023. With …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought … have a number of initiatives across several different campuses with this being our largest and most successful one. … Machine Learning at Pilot Flying J. Nathaniel Brown was a 2022 graduate student intern who is now a graduate …
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From Competition to Cooperation
… walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which degrade plant detritus. Despite the different modes of nutrition, many of these … in moving toward functional genomics studies to learn more about the inner workings of plant-host and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied …
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David Goodstein
KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of … Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in … acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks regions of interest and gene copy …
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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into the world of … Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: …
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