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Reactive iron, not fungal community, drives organic carbon oxidation potential in floodplain soils
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Chaparral wildfire shifts the functional potential for soil pyrogenic organic matter and nitrogen cycling
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Floodplain nitrifiers harbor the genetic potential for utilizing a wide range of organic nitrogen compounds
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Refining the Process of Identifying Algae Biotechnology Candidates
… ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae … feedstocks that can thrive in saltwater mitigates concerns about diverting resources such as arable land and fresh … to various stresses, and its transcriptome to learn more about which genes expression patterns. The analysis led to …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … support of our goals,” said Mouncey. “Creating transparency about our efforts is critical for enabling complementary and …
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Hiroshi Otani
… particularly actinomycetes. His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of … Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, …
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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Architecture, catalysis and regulation of methylthio-alkane reductase for bacterial sulfur acquisition from volatile organic compounds
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it … The ability to user query sequences to gene families What about PhytoMine? PhytoMine, the Phytozome implementation of …
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From Competition to Cooperation
… walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of plant-host and … of Energy Joint Genome Institute, a DOE Office of Science User Facility, and supported by the Office of Science of the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … give researchers a way to access much more information about fungi in these environments. “Now with these new tools …
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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues …
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