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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… peer through the waters and clouds of insects hover just above. Described as a “river of grass” that stretches … to apply the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall … to the refuge to collect soil samples from multiple locations. Back in the classroom, JGI researchers walked …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All of …
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From Textbook to Real World Applications
When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting … Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS proposals have helped advance … program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for this …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter …
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Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … like one, is it still a duck? For a team led by researchers from The Ohio State University and the University of … ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that are transformed …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change … began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Refining the Process of Identifying Algae Biotechnology Candidates
… ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae … feedstocks that can thrive in saltwater mitigates concerns about diverting resources such as arable land and fresh … for controlling the lipid content of biofuels sourced from algae. The collaborative approach highlights how the …
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