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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … genome, which is key to understanding its full evolutionary history. Through studies of the  Marchantia pangenome, …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, and …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao Chen, Jay Chen, Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes … and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial …
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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … of vertebrate genomes, which led to the discovery of thousands of genetic switches implicated in developmental and …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but … is sometimes not easy to find out) A: If these names are assigned in the process of annotation or manual curation they …
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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JGIota: A Surprise for Chloroflexota — The First Flagella!
… in hot springs. Hear how their recent work revealed more about the history of the Chloroflexota phylum and a new way of moving: …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Recent findings in Ceratopteris richardii show a long history of dynamic evolution and rapid changes in both … well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … of plant-based biofuels and bioproducts. ( Learn more about OGG in  this episode of to the JGI podcast Genome …
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JGI-UC Merced Interns Share Their 2021 Experiences
… working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and … PhD research. And for the first time in this program’s history, two interns returned to re-engage with their … foster a diverse future workforce in science. To learn more about each intern’s experience during their internship, …
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