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Industry Engagement Program
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Busting the Unbreakable Lignin
… Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research Office contract W911NF-19-1-0010 (MAO), National Science Foundation grant MCB-1553721 …
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JGI@25: The Little Alga That Could
… specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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Fungal & Algal Program
… biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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First Monoploid Reference Sequence of Sugarcane
… modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the size of the … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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A Complex Confection Decoded: Sugarcane Reference Genome
… The work (proposal: https://doi.org/10.46936/10.25585/60001084 and … of Energy (DOE) Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility and the …
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You Can Move, But You Can’t Hide
… of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific … to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., DEAC05-76RL01830 to P.N.N.L.), and used computational resources from … (LBNL), 89233218CNA000001 (LANL), and DE-AC05-76RL01830 (PNNL). …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … when we mapped the first sequenced RNA from the soil, only 10% of them were mapping to the fungal genomes at the JGI,” Martin said. An effort called the 1000 Fungal Genomes project changed that. This is a …
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Environmental Genomics Group
… microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. … metagenomic time-series from Lake Mendota. Sci Data 11 , 966 (2024). https://doi.org/10.1038/s41597-024-03826-8 …
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