Results

Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … nitrogen metabolism, this team built a phylogenetic tree using bioinformatic software called FastTree and identified …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … development enrichment activities. For some students in the 2021 cohort, this was their first internship experience, … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Pinning Down a Piece of Photosynthesis
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that …
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