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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … experience in molecular biology and plant functional genomics, because this work is essential for improving crop …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses … P. virgatum on Phytozome … Plant Dataset …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — … Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and … Research was supported by grants from the USDA NIFA AFRI (1758976 to …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, … P. vulgaris on Phytozome … Plant Datasets …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
Learn more
Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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