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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still support a unique … Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to K.A. We thank …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be … uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short …
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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI … Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a … development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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