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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data …
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Jinghua Jenny Huang
Jenny is working on the display and visualization of large amount isolate genomic and metagenomic … in Oracle databases, Berkeley DB and files in various formats. …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
The  National Ecological Observatory Network (NEON) is a network … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … webinar complements a  recent webinar co-hosted by the JGI and EMSL inviting researchers to apply for a …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Petra Byl
Petra is an affiliate researcher who cultivates marine algae infected by giant viruses from subtropical, oligotrophic ocean gyres. …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … a novel approach to better understand microbial communities by looking at protein function within them. The work was led … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … layers. The architecture of these algorithms, inspired by communication networks found in nature, allows machines …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing … in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … that pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. …
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