Results

Large Direct Repeats Flank Genomic Rearrangements between a New Clinical Isolate of Francisella tularensis subsp. tularensis A1 and Schu S4
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High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Honey Bee Gut Microbiota Divvy Up Dinner
… But scientists have wondered exactly how the microbial community carries out its helpful metabolism: … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also … known fossil record of land plants and evolved in early microbial biocrust environments.     …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of … collaboration with the JGI Algal Program, which explores genomics of algal diversity and biology to support basic … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Plant Root Atlas for Tracking Developmental Trajectories
… developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Pinning Down a Piece of Photosynthesis
… what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized hundreds of  … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Fungal Friends or Foes in Plant Roots
… determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … of the key community participants and enabling future metagenomics studies.   … Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in … DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to test enzymatic … to the year-round Community Science Program Functional Genomics call for proposals .   …
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