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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… practices that support agriculture – such as efficiently using dwindling water resources and restoring and maintaining … partnering with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … Implementation of the Index of Cell Identity as an R package …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … freely available online ). It combines and evaluates multiple predictions to reliably match viruses with their …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … to learn more about the program's areas of focus, major initiatives and more.  …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance … (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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