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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Powerful Technique to Study Microbes, Now Easier
… Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these experiments easier …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative … analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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“A STEM career is in reach and accessible”
… Notes from the Summer 2018 Biotech Partners Interns from Antioch High School. Though a partnership with Biotech Partners, a nonprofit that provides underserved youth in the Bay Area … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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JGIota: Looking Back at Sequencing for Soybeans
… a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s strengths …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE technologies. While … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Fungi That Survive In Antarctica
… survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to understand them better. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of … MGEs, that can move between organisms. But now, deep sequencing and new analysis methods are bringing this mobilome into … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database … through the more than 2 million viral sequences available in IMG/VR v3. …
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