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Better Living Through Bioenergy
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. … at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene … annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on R&D projects. …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing environments … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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Corals in Hot Water Get Help From Their Microbes
As waters warm due to climate change, corals are in mortal peril. But corals comprise …
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MGM Workshop at Fisabio Summer School
June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and … professionals of biology, biomedical research, the health sciences and related fields who are interested in learning …
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From Textbook to Real World Applications
When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new … utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Gotta Catch 'Em Gall
Kasey Markel and Patrick Shih (UC Berkeley and the Joint … about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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