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Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity At first … the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … kind of discovery opens new questions about bacterial morphotypes that have never been studied before.” Characterizing …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … The JGI was created in 1997 to unite the expertise and resources in …
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Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … models and their close relatives across the fungal tree of life, enriching the work being done as part of the 1000 …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … sites. There was slight congruity between all the sites.  Shotgun metagenomic analysis discovered the presence of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … for short — helps plants that have it lose less water in a hot, dry environment. Figuring out how plants evolved to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck … from The Ohio State University and the University of Michigan studying how virus infections cause significant … A portion of this research was performed under the …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Science user facility, aims to explore applications in the life sciences that can be ported to the GPU architecture. A …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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