Results

Omega: an Overlap-graph de novo Assembler for Metagenomics
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Biases in genome reconstruction from metagenomic data
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A metagenomic perspective on the microbial prokaryotic genome census
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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Extreme Scale De Novo Metagenome Assembly
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A …
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Targeted single‐cell sequencing
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Introduction: Sequences and consequences
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Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification
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