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Draft Genome Sequences of Switchgrass Diazotrophs
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Olpidium, The Key to the Origin of Terrestrial Fungi
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … plants to bacteria. Back in 2011 when these genome and transcriptome data were generated, bioinformatic tools for … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species
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Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol▿ †
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The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … rumen microbes are awesome and this is just another example why.” …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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