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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing … species. The 62 mycorrhizal species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  genomes …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an organism’s … structures and functions of the genes encoded in the genome sequence is part of the integrative science mission of the …
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JGI@25: The Little Alga That Could
… sustainable biofuel production. The JGI published a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published in the journal Science . At the … when the JGI launched its effort to produce a full sequence of the Chlamydomonas genome in the early-2000s. She …
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Soil virus offers insight into maintaining microorganisms
… AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … genes and mutants. DOIs of publicly available chitosanase sequences were retrieved using the  JGI’s Integrated … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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Single-cell genomics for the masses
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JGI on the 2020 Highly Cited Researchers List
… that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … from samples provided by more than 200 scientists and sequenced by the JGI through the  Community Science Program, … they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi …
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus
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Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga
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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
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A mosaic monoploid reference sequence for the highly complex genome of sugarcane
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