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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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Doubling Down on Known Protein Families
… ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …
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Draft Genome Sequence of Monaibacterium marinum C7T, Isolated from Seawater from the Menai Straits, Wales, United Kingdom
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Learning to Look
… case, the machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
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A compendium of multi-omic sequence information from the Saanich Inlet water column
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
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Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
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Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … water research. The meeting involved key representatives from the ACTIVE SITES Research Center (ACSI), the Centre for … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are …
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