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A Complex Confection Decoded: Sugarcane Reference Genome
… sugarcane genome was more challenging and took more than a decade because there were pieces from multiple boxes, … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Functional genomic screening in Komagataella phaffii enabled by high-activity CRISPR-Cas9 library
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Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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Fishing for Novel Cellulose Degraders
… screen, they can now identify microbes with specific functional characteristics. When they tested the screen … they uncovered a novel cellulose-degrading bacterium typically found in low abundances. The Impact Microbes are known … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form …
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Emiley Eloe-Fadrosh
… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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Fungal Friends or Foes in Plant Roots
… work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by … the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant Dikaria”. This work was supported by funds to …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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JGI at the AGU Fall Meeting
… of interest (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of … Learn About Available Expertise and Resources, Open-Call Opportunities, and Important Tips for Submitting Successful Proposals December 9  4:15pm PT (online) Town Hall on how the …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … (ANR LEVEL-UP ANR-21-CE20-0010-01) to C.J., from ZhuJiang (2019ZT08N628) and the National Natural Science Foundation of …
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Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
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