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How Filamentous Fungi Sense Food
… break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an … can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep
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Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake
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Prediction, enrichment and isolation identify a responsive, competitive community of cellulolytic microorganisms from a municipal landfill.
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A Grass Model to Help Improve Giant Miscanthus
… genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate bioenergy … guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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2022 Progress Report
… home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … The mission of the JGI is to provide the global research community with access to the most advanced integrative …
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Pinning Down a Piece of Photosynthesis
… light microscope, and fickle, often hiding their function from even the most determined scientist.  Recent work in  … an array of experiments at universities and national user facilities, researchers found that this protein detects … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s …
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