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iPHoP: A Matchmaker for Phages and their Hosts
… nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality and number …
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Building Sphagnum Genomic Resources
… (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … Through the CSP, researchers are aiming to have two high quality reference genomes for peat-forming species that … In addition, this work reflects a collaboration between two programs within different Divisions of the Office of …
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High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … species to answer questions about how they break down plant materials, which could be useful for industrial biofuel …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … the Advanced Light Source, future collaborative research projects were also intensively discussed. The Berkeley …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… run away, they’ve evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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