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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… capability available through the  Community Science Program (CSP) . This includes mass spectrometry-based … apply to access the JGI’s resources. Q:  Where can I get information for funding by JGI? A: The JGI is not a funding … available on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of JGI eligible …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort … One of the mentors, postdoc Yumary Vasquez, was herself a program alum from the 2022 cohort.  The UC Merced interns … project, Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve …
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Plant Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … (Tokyo University) Dongfong Wang (Spelman University, VFP Program) Emerald Nash (UC Merced Intern) Tyrome Sweet (UC …
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JGI at the AGU Fall Meeting
… December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … Integrating Collaborations for User Science (FICUS) program allows scientists access to multiple user facilities … and volatile organic compound cycling in the tropical rainforest at Biosphere 2” 2pm Convention Center, Poster Hall …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project … multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the FUNCODE …
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The Power of One, Amplified
… In recent years, advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Robert Bowers , a JGI scientist within the Microbial Program, led the genomic analyses to compare the resulting …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … will strengthen future virus-host predictions. This information could open the door to improving crop yields and …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as … access to high-quality, assembled datasets from all of this information. The JGI aims to create pipelines, tools and … from this sample set through the Community Science Program, it was the largest project the JGI had ever put …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… to the Facilities Integrating Collaborations for User Science (FICUS) Call Karolina Michalska , Advanced … Laboratory: “Advanced Photon Source Capabilities for FICUS Program” Sabeeha Merchant , University of California, … or experimental design, contact  Tanja Woyke , Deputy for User Programs. EMSL : Contact EMSL User Program Services …
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Fungus Fuels Tree Growth
… (Sunny) Liao of the University of Florida collected forest samples of poplar and soil from Washington and Oregon. The … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. elongata and  I. europaea  …
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Emiley Eloe-Fadrosh
… environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore Foundation as … National Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome …
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