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Poisson hurdle model-based method for clustering microbiome features.
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Metagenome-assembled genomes from microbiomes fermenting dairy coproducts.
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Standardized naming of microbiome samples in Genomes OnLine Database.
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Viromics approaches for the study of viral diversity and ecology in microbiomes
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Climate-driven succession in marine microbiome biodiversity and biogeochemical function
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel … years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Partners
… The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve … . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  … — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help … environmental conditions may affect metabolic activity of microbiomes. This is key because these examples were picked …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, … the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced … (form symbiotic relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … seagrasses, considered marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in her ongoing CSP New Investigator proposal. As …
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Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
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