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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were nearly … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence … for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s strengths …
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … new collaborations with the FICUS program, through which researchers can access multiple DOE facilities with a single …
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Matt Blow
… vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on … function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs … In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of weakly conserved heart …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… representatives of deep subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted … of Duisburg-Essen and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG …
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Dealing with Drought: Uncovering Sorghum’s Secrets
The field experiment is led by a consortium involving researchers from the University of California (UC), … Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… technologies and computational methods in the past decade, researchers have uncovered genomes for just a small fraction … more than 200 scientists, researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type …
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Pinning Down a Piece of Photosynthesis
… the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … at Berkeley, as well as other DOE user facilities — Brookhaven National Laboratory’s National Synchrotron Light … — but the experts we were able to work with on this project to ask questions about structure and function,” …
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A Collaboration to Improve Plant Genome Annotations Across Species
… capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for … As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research …
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