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Identification of ancient remains through genomic sequencing
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Genome sequence of Streptomyces auratus DSM 41897
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Genome sequence of Streptomyces sp. DSM 42143
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal … Laccaria bicolor on MycoCosm … Laccaria bicolor has a symbiotic relationship with poplar …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. …
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Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER funds) to F.J.R.-D., S.C., and …
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JGI@25: Building a Better Bean
… in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … molecular markers, and slow-darkening has become standard for pinto beans. These beans cook faster, retain …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence …
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JGIota: Looking Back at Sequencing for Soybeans
… fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … Institute (JGI), a DOE Office of Science User Facility. The sequences were then biochemically characterized by a team … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with …
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