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Building Sphagnum Genomic Resources
… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … of Vienna  reported recovering draft metagenome-assembled genomes for seven novel species of Acidobacteria through an …
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Jeremy Schmutz
… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed … of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides … scientific project management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said … adapted the method to handle the complexity of large plant genomes. In addition: Multiplexed barcoding enables the …
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Who We Are
… access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …
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Busting the Unbreakable Lignin
… (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to the plants’ lignocellulose …
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining … the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . 39(5):578-585. Nayfach S, et …
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JGI@25: From Life at the Extremes to Editing Genomes
… is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …
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Virus Discoveries that Keep Getting Bigger
… Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … culture-independent approaches to gain insight into the  genomes of giant viruses. In a new review, researchers from … sequence data is read-mapping: using giant virus reference genomes to search for giant viruses in metagenomic reads. …
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The role of zinc in the adaptive evolution of polar phytoplankton
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New and Improved: Eucalyptus Reference is Now Accessible
… eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …
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JGI Scientists Pen Genome Watch Articles
… move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …
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