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JGI@25: The Little Alga That Could
… and environmental challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. … 7,000 genes with other organisms (a third of those shared by both humans and flowering plants). Its genome also … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. …
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Busting the Unbreakable Lignin
… tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, … to any type of lignin breakdown — and lignin breakdown by anaerobic fungi therefore thought to be impossible.  And …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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JGI@25: Solving the Mystery of the Missing Oil
… at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab collaborations. The JGI’s single cell genomics expertise led to the identification of a new … what happens at all levels and developing models for cellular properties, communities and ecosystems.” Building …
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Special Initiatives & Programs
… negotiation with the JGI.  Investigators with grants funded by DOE-BER requiring support from the JGI may  submit … intended to accelerate basic research in the development of cellulosic ethanol and other biofuels, advancing the federal … data set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level …
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Len Pennacchio
… in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from … Data Generation Platforms (Sequencing, Single Cell, DNA Synthesis, and Metabolomics) as well as Research & …
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JGI@25: Using Team Science to Build Communities Around Data
… in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms rearrange their cells around this … Institute is a DOE Bioenergy Research Center managed by Berkeley Lab. For more information, please visit  …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms rearrange their cells around this … Institute is a DOE Bioenergy Research Center managed by Berkeley Lab. For more information, please visit  …
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Introducing New Members of the JGI User Executive Committee
He also wants to assist JGI in extending its activity-based cell sorting pipelines to further the link between cellular phenotypes and genotypes. Pawlowska, who studies …
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How to Target a Microbial Needle within a Community Haystack
… from complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating …
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