Results

Genome‐wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … microbial responses and feedbacks to warming through the whole soil profile. The goals of their FICUS proposal …
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Identifying genomic data use with the Data Citation Explorer
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
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Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism
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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to … working with a grass plant that’s similar to wheat and rice called Brachypodium distachyon. LaMonika Dent : We have …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics … genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … them in plants other than maize including black cottonwood, rice,  Arabidopsis ,  Mimulus and Amborella (in …
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Game On: High School Students Drive Everglades Metagenomics Study
… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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