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JGI@25: The Little Alga That Could
… sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional annotation, … within Chlamy, meaning that its RNA can produce up to four proteins, which has far-reaching implications. “This is …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant … in the moss. Previously it was theorized that sex determination was possibly driven by genetics, or even …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … into how soil viruses , and in particular a chitosanase protein, can contribute to soil health. He also contributed … that scans specifically for RNA virus sequences, initially using it to comb through more than 5,000 data sets and …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Corymbia Genome Expands Terpene Synthesis Knowledge
… revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . … are desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes … Training Program Scholarship. Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… bacterial and archaeal genome sequences have been generated using techniques that the JGI has pioneered, including … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Fungal diversity and function in metagenomes sequenced from extreme environments
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry to … Hualan Liu, Building Expression Host in Bacilli Class using CRAGE Technology Emerald Nash and mentor Jonelle … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… viruses from environmental sequences across the globe, then using these sequences to make inferences about the … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the … to mine, bin and then filter the data for the major capsid protein (MCP) to identify NCLDV viruses. JGI researchers …
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Comparative analysis of carboxysome shell proteins
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Extreme-Scale Many-against-Many Protein Similarity Search
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