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Microbial Genomics & Metagenomics (MGM) Workshop
Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: …   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by … strides in generating genome sequences for members of the microbial world through bulk community sequencing …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users and microbiome … at Colorado State University have many questions about the microbial communities deep underground, and before the …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat
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Model Fern Reveals Insight into DNA Thievery in Ferns
… richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Patterns in Wetland Microbial Community Composition and Functional Gene Repertoire Associated with Methane Emissions
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using … corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that maize … buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… the metabolomic analysis capability available through the  Community Science Program (CSP) . This includes mass … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic … of Michigan studying how virus infections cause significant metabolic changes in marine microbes, the answer is no. … microbes that capture and store carbon in the ocean could fix less carbon when infected. Little is known about …
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