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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … potential waiting to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence … the user to analyze these data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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Dan Rokhsar
… joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to develop computational methods applicable to the diverse eukaryotic species, which …
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … But for them to be able to pull that water through the whole plant system, they need to open these pores in their …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into sustainable fuels … Johnson Wildflower Center provided support and field sites for experiments. This work was funded by NSF/IOS-1402393 …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes
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