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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … platform (http://southgreen.cirad.fr). For the portion of the work conducted by the Joint Genome Institute and the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … Diversity The results revealed inoviruses are in every major microbial habitat—including soil, water, and … of bacterial CRISPR-Cas systems that have no conserved structural motifs or domain architectures. “Anti-CRISPRs are …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … communication and cooperation. Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete … needed for meiosis, and thus can rapidly create genetic variation in its progeny. The study’s transcriptomic data …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, … This the third episode of Natural Prodcast, and the third and final part of our …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … genomes Keynote Talk Title: Transposable Element-Mediated Structural Variation — From McClintock to Pangenomes Susan Wessler is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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Genomic variation in 3,010 diverse accessions of Asian cultivated rice
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Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids  
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