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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of these photosynthetic organisms. PhycoCosm is one of the largest data repositories of its kind, with an interactive … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … for mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said …
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Nikos Kyrpides
Science. His group is developing novel methods for enabling large-scale comparative analysis, as well as mining and … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … data from the precious Olpidium zoospores remained largely untouched until seven years later. In 2018, as …
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2024 Progress Report
… user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … JGI as a leader in single-cell genomic amplification at a large scale. Summary The two most common methods for collecting …
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