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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … these lines, all with the goals of better data reporting, improved collaboration, and more comparable analysis. A Data …
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were …
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Alabama Agricultural & Mechanical University Internship Program
Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with …
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User Support Analysis Group
User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Marcel Huntemann
… of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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