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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … metagenome binning software … Education … Selected Publications … Software …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Jinghua Jenny Huang
Jenny is working on the display and visualization of large amount isolate genomic and …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … of a common set of enzymes.” Gribaldo will be speaking on “Exploration of Metagenomic Data to Understand the Diversity …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Behind the Paper: Hot Springs Metagenomics
Adapting the graduate research experience amidst a global pandemic   …
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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A Bioinformatician's Guide to Metagenomics
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