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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … users, GenomeOcean also utilized large-scale metagenomic assemblies from three terabase-scale (Tb) coassemblies that … Lab’s Computing Sciences Area to develop an efficient metagenome assembler capable of assembling many terabases of …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … workflows to produce high-quality, comparable genome assemblies across diverse species. The MycoCosm platform has …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Exploring symbioses by single-cell genomics.
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
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JBrowse: a dynamic web platform for genome visualization and analysis
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GenomeVISTA—an integrated software package for whole-genome alignment and visualization
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, … , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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