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Genomic characterization of carbapenem-resistant Shewanella algae isolated from Asian hard clam (Meretrix lusoria)
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Benjamin Cole
… to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium)
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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
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High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Such proteins have been adapted for therapeutic application development by Mammoth Biosciences, one of several companies … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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John Vogel
USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for … data set will help identify how different elements of the ecosystem interact and respond to changes in the … in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. Department of …
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Hiroshi Otani
JGI, he studied transcriptional regulation, metabolism and development in actinomycetes. He is particularly interested … Otani, H., Lee, Y.E., Casabon, I., and Eltis, L.D. (2014) Characterization of p-hydroxycinnamate catabolism in a soil … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … Institute and the Laboratory Directed Research and Development Program of Berkeley Lab, among other …
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