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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art … All proposals will be externally peer-reviewed for scientific merit, … Proposers are encouraged to review the JGI’s sample requirements . … of insufficient quality or quantity will preclude approval for processing. …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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Extreme Scale De Novo Metagenome Assembly
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Biases in genome reconstruction from metagenomic data
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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Metagenomic analysis of a stable trichloroethene-degrading microbial community
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Assembling the Marine Metagenome, One Cell at a Time
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Annotation of metagenome short reads using proxygenes
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