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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … a single cell and isolating it for analysis. Once it’s alone, the cell breaks apart and its DNA is copied millions of …
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IMA genome-F18
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Understanding Wildfire Recovery, Starting in Soil
The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … and Coniochaeata lignaria , and both DNA and RNA viruses. One trait that stood out in both bacteria and fungi …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … included over 2000 RNA Seq libraries. As I previously mentioned, this is an updateable resource. To demonstrate that, … of genes across the investigated plants. We did so by analyzing this huge sample set specifically using results …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … the adaptive potential of switchgrass and is a key component in providing genetic variation available for selection … (visible traits) diversity. After our team finished analyzing the diversity present in 4X switchgrass, we were …
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Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
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From Competition to Cooperation
… able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … MycoCosm . The work builds upon several papers and workshops, starting with the first mycorrhizal genome sequence …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … Communications takes on the challenge of understanding one of these proteins — and its role in photosynthesis — in … a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function …
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Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses
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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
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A Complex Confection Decoded: Sugarcane Reference Genome
… world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … accounts for 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a … Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., …
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