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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … colonize roots by degrading the plant cell wall component pectin. The results therefore predicted that these …
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … marine bacteria called “Vis6” that are found in North Sea algal blooms. The workflow starts by tagging specific cells … (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent molecule when bound to a …
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Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
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Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter
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Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … Several accepted proposals reflect JGI’s interest in algal research for bioenergy production and algae’s roles in … more than 10,000 undergraduate students each year. Brian Looney of Duke University is interested in understanding which …
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IMA genome-F18
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … the adaptive potential of switchgrass and is a key component in providing genetic variation available for selection … (visible traits) diversity. After our team finished analyzing the diversity present in 4X switchgrass, we were …
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Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea
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