FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
Results
Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development
Hidden diversity of soil giant viruses
The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
Optimizing de novo genome assembly from PCR-amplified metagenomes
Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
Meeting report: International soil virus conference 2024
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus
For the Tiniest Archaea, A Genomic Switch of Friend or Foe
JGI at the AGU Fall Meeting
