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… of analytical tools and user interface components for the IMG family of systems. …

… (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …

… design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …

… role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user … and implementation of microservices in conjunction with the IMG platform. …

Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), …

… 2017 Summer Interns Share Highlights of their time at the JGI …

The JGI’s Microbial Program focuses on using cutting-edge … and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including … directly isolated from environmental samples.  … The IMG/M system serves as a community resource for comparative …

Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … improved varieties for biomass production. He did his postdoctoral studies at the Carnegie Institution for Science …  https://doi.org/10.1111/nph.15662 Gordon, et. al. 2017 Extensive gene content variation in the Brachypodium …

… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data … users to leverage biological and biochemical functions to meet climate and energy goals, improve food security and …

Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja …

… the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the … genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … life.  Nature Microbiol. 3(12):1417-1428. Haitjema et al (2017) A parts list for fungal cellulosomes revealed by …

JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release … assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and …