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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … process — as well as a key way scientists study microorganisms. Because microorganisms live in complex … Work at Lawrence Livermore National Laboratory was conducted …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel teamed with … student summer research experience at the JGI, the Genomics Internship Program expanded to include UC Merced … a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the students …
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization
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DAS Tool for Genome Reconstruction from Metagenomes
… that combines existing DNA sequence binning algorithms, allowing them to reconstruct more near-complete genomes from … methods. The Impact Understanding how individual microbes interact with each other in a community, and characterizing … members and their genome-encoded metabolic capabilities and interactions. Supported by JGI’s ETOP, this new tool will …
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Separation of life stages within anaerobic fungi (Neocallimastigomycota) highlights differences in global transcription and metabolism
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further confirmed by …
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Alabama A&M Interns Access An Abundance of Knowledge
… Genome Institute and Alabama A&M University piloted an internship program to bring students to the JGI for research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna Watson and … Alabama A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … that will help solve energy and environmental challenges. Within days of the Deepwater Horizon oil rig explosion that … developing models for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab …
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Doubling Down on Known Protein Families
… with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial … is, they are similar to previously known genes from isolate organisms, but we still aren’t sure of their function.  … marine ecosystems, etc.  “So, they must be doing something interesting or important for that habitat,” Pavlopoulos …
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