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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … scientist Alan Kuo at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, …
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The Power of One, Amplified
… similar across sequencing approaches, that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … of Calgary and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … metagenomes (collections of partial genomes) from six hypersaline Antarctic lakes. The Impact By collecting … distinct and unique. In collaboration with the DOE Joint Genome Institute, a DOE Office of Science User …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. … Fungal Datasets … Genome Inside: THE Bioenergy Tree …
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … part of our data analysis plan mapping of short-reads datasets (metagenome or metatranscriptome) to a relevant … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Webinar: SIP technologies at EMSL and JGI
… Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last … users — have access to high-quality, assembled datasets from all of this information. The JGI aims to create … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI … Department of Energy biology programs, and represents the Joint Genome Institute at national and international forums. …
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Sequencing crop genomes: approaches and applications
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Selection to sequence: opportunities in fungal genomics
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