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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Axel Visel
Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … rewiring of gene-enhancer interactions. Cell 161, 1012-25 Ivanova NN, Schwientek P, Tripp HJ, Rinke C, Pati A, …
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FICUS-NERSC/KBASE
… bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center ( NERSC … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … to the community at large. In most cases where the JGI provides more customized analysis, the JGI also participates in …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… in Mexico. While conducting early field studies related to her thesis on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016. …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … Architectures for Chronic Pain and Opioid Addiction,” SC18: International Conference for High Performance Computing, …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind … Lines 2014 Plant Journal 79: 361–374 DOI: 10.1111/tpj.12569 Hsia, et. al. 2017 Sequencing and functional validation …
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Computationally Classifying Fungal Lifestyles
As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Dothideomycetes . The data allowed the team to reclassify 25  Dothideomycetes species, and also provides more …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human Resources, … School of Business … The Deputy of Operations provides oversight and leadership of JGI operations …
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … their impact on cotton improvement. Nature Genetics 52: 525-533. Lovell, JT et al. 2018. The genomic landscape of …
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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
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VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
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Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice
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