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ORT: A workflow linking genome-scale metabolic models with reactive transport codes.
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A most wanted list of conserved microbial protein families with no known domains
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Discordant population structure among rhizobium divided genomes and their legume hosts
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DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus
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Tanja Woyke Elected to American Academy of Microbiology
… their evolutionary relationships and leading to the discovery of features such as a new genetic code. More recently … to see Dr. Woyke’s important work acknowledged by this most prestigious honor,” said Axel Visel , JGI Deputy for … giant virus studies has been groundbreaking. The JGI is most fortunate to have scientists of Dr. Woyke’s caliber …
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Open Frameworks Training the Next Generation of Scientists
… Myco-Ed :  The Mycological Curriculum for Education and Discovery is a microbiology program that provides training and … sequencing services and analysis—to participants. Over the past two years, Myco-Ed has been used in 15 … there are not many available to study. This is because most fungal clades have no reference genomes. It’s a key …
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Triggering Morel Fruiting
… While scientists and biotechnological engineers all over the world continued to seek other ways to make morels … More importantly, this mechanism can keep the forests from over-accumulation of plant litter, which could cause forest … the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope Probing (SIP) has … with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in Berkeley.  Organizing this workshop, too, …
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Expanding Virophage Diversity
… co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in … 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to … were considered to be complete genomes, and their discovery has extended the possible virophage genome size range …
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Help from Citrus’ Bitter, Hardier Cousin
… in  The Plant Journal.  this study included the discovery of candidate genes that confer resistance to citrus … research led by Gmitter and JGI’s Daniel Rokhsar, published over the last half-dozen years, on the ancestral origins of  … the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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The JGI Data Portal: Improving User Experience
… unique areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 … the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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Statement on the Use of Genomics Data
… to resources and promoting data sharing to accelerate discovery and maximize the benefit to society. Inspired by the … that JGI indicates the data should be publicly released. Over the next several weeks, the JGI will be in contact with … the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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