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Metagenomic Sequencing of Two Salton Sea Microbiomes
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … stressors, um, alter microbial biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is trying …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New … in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the side … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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10 From JGI on the 2019 Highly Cited Researchers List
… their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology section as “those that rank in the … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and also do some …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large …
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SpaRC: scalable sequence clustering using Apache Spark
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Improving genome assemblies by sequencing PCR products with PacBio
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Complete Genome Sequence of Francisella philomiragia ATCC 25017
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