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Overview of Laboratory Workflows for Microbial Single-Cell Genomics
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto … noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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Single-cell genomics for the masses
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … the ocean through vents at temperatures that can exceed 750 degrees Fahrenheit. The minerals in these fluids include … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica.
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single largest … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … North America that has been the target of extensive natural sampling and field experiments due to its potential for … This means it contains more than two copies of the genome , which can have pronounced ecological and …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … We’ll hear more about CAM and Karolina’s quest in a future episode of our JGI podcast, Genome Insider. I’m Alison Takemura. See you next time. …
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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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Microbial species delineation using whole genome sequences
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