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Defining a Pan-Genome for Antarctic Archaea
… The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … microbes have learned to adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Webinar: MycoCosm Tutorial
… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] … the Principal Investigator of the corresponding genome projects as they may coordinate users in the community …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine … researchers exploring a dark room with a flashlight, only able to clearly identify what falls within that single … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: … smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of … Michael Jewett of Northwestern University describe a two-pronged approach that starts with engineered yeast cells but …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … factors bind in the genome. A key aspect of the project is understanding what TFs and regulatory networks …
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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in … the previous year and continue working on their research project! The JGI-UC Merced internship program was founded in … Evolution of the Mitochondria Internship …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … of Impact.     Notable large-scale multi-institutional JGI projects and resulting publications that Grimwood …
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JGI announces 2024 Functional Genomics awardees
… year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and … in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity for …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … of shrub willow have been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the …
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